Chemistry and Physics of Lipids
January 7, 2023
Fateme Zohairi, Himanshu Khandelia, Ali Asghar Hakami Zanjani
20 citations
Naturally occurring psychedelics have therapeutic potential for anxiety, depression, migraine, and addiction. Their effects may arise from binding to serotonin receptors or by altering neuronal membrane properties. Using all-atom MD simulations, three tryptamine compounds (dimethyltryptamine, bufotenine, and 5-MeO-DMT) in neutral and charged forms were studied in a model bilayer membrane. All compounds partition into the bilayer and change membrane properties to different extents. Neutral tryptamines partition almost completely; dimethyltryptamine and 5-MeO-DMT cross the membrane spontaneously, but bufotenine does not, despite having the greatest effect on membrane structure. Protonated compounds only partially partition and cannot cross the membrane. Subtle chemical structure changes significantly influence partitioning and membrane passage.
Biochimica et Biophysica Acta (BBA) - Biomembranes
May 10, 2022
Teresa Quynh Tram Nguyen, Frederik W. Lund, Ali Asghar Hakami Zanjani et al.
9 citations
Psilocin, the active compound in magic mushrooms, and the hormone serotonin both interact with cell membranes in similar ways, potentially contributing to their effects. Using computer simulations and laboratory experiments, researchers found that both molecules insert into lipid membranes and make them thinner. Psilocin penetrates the membrane more than serotonin does, but its chemical structure—a tertiary amine versus serotonin's primary amine—limits its impact on the membrane. Both compounds also lower the melting point of the membrane, a property shared with anesthetics. These findings support the idea that psilocin and serotonin may influence receptors indirectly through the membrane, not just by direct binding, and highlight how small chemical differences alter membrane interactions.
FEBS letters
March 1, 2025
Niklas Viohl, Ali Asghar Hakami Zanjani, Himanshu Khandelia
7 citations
The 5HT2AR receptor, a G-protein-coupled receptor targeted by psychedelic drugs, collapses to a closed active state without Gqα, revealing an intermediate partially-open conformation. Molecular dynamics simulations and free-energy calculations show that serotonin and psilocin bind more tightly to the orthosteric pocket than to the extended binding pocket. These findings clarify activation mechanisms and may guide development of novel therapeutics for neurological and psychiatric disorders.
Biochimica et biophysica acta. Proteins and proteomics
July 1, 2023
Ali Asghar Hakami Zanjani, Teresa Quynh Tram Nguyen, Luise Jacobsen et al.
6 citations
Psilocin, the active form of psilocybin in magic mushrooms, binds more strongly to the serotonin 2A receptor (5-HT2AR) than the natural hormone serotonin does. Using molecular dynamics simulations and free energy calculations, the authors show that this higher binding affinity is due to psilocin's tertiary amine group, not the different position of its hydroxyl group. The binding strength depends on the protonation states of both psilocin and a key receptor residue, aspartate 155. These molecular insights suggest design rules for developing more effective antidepressants.